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List of Publications 2005

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35 references, last updated 2005-11-11

[1]
Tobias Andersen, Kaisa Tiippana, Jari Laarni, Ilpo Kojo, and Mikko Sams. Visual spatial attention in audiovisual speech perception. Published as technical report b48, isbn 951-22-7552-x, Helsinki University of Technology. Laboratory of Computational Engineering, 2005.

[2]
Tobias Andersen. Model-based assessment of factors influencing categorical audiovisual perception. Dissertation for the degree of Doctor of Science in Technology, Helsinki Univerity of Technology. Laboratory of Computational Sciene and Engineering, 2005. Published as technical report B47, ISBN 951-22-7547-3.

[3]
Lei Dong, Mikko Karttunen, and K. W. Yu. Spectral representation of the effective dielectric constant of graded composites. Phys. Rev. E, 72:016613, 2005.

[4]
E. Falck, M. Patra, M. Karttunen, M. T. Hyvonen, and I. Vattulainen. Free area theories for lipid bilayers - predictive or not?. Biophys. J., 89:745-752, 2005.

[5]
E. Falck, M. Patra, M. Karttunen, M. T. Hyvönen, and I. Vattulainen. Voids in phospholipid/cholesterol bilayers. Biophys. J., 88:245A, 2005.

[6]
A. Gurtovenko, M. Miettinen, M. Karttunen, and I. Vattulainen. Atomistic simulations of cationic lipid membranes: effect of salt. Biophys. J., 88:420A, 2005.

[7]
A. A. Gurtovenko, M. Miettinen, M. Karttunen, and I. Vattulainen. Effect of monovalent salt on cationic lipid membranes. J. Phys. Chem. B, 109:21126-21134, 2005.

[8]
A. Honkela and H. Valpola. Unsupervised variational Bayesian learning of nonlinear models. In Advances in Neural Information Processing Systems 17 (NIPS 2004), pages 593-600. 2005.

[9]
J. P. Huang, K. W. Yu, G. Q. Gu, Mikko Karttunen, and L. Dong. Reply to "comment on the use of the method of images for calculating electromagnetic responses of interacting spheres. Phys. Rev. E, 72:023402, 2005.

[10]
Zak E. Hughes, Lorna M. Stimson, and Mark R. Wilson. accepted for publication in numerical methods for partial differential equations. accepted for publication in Soft Matter, 2005.

[11]
A. Huttunen and P. Törmä. Optimization of dual-core and microstructure fiber geometries for dispersion compensation and large mode area. Optics Express, 13:627, 2005.

[12]
A. Huttunen, K. Varis, K. Kataja, J. Aikio, and P. Törmä. Guiding and reflecting light by boundary material. Optics Communications, 244:147, 2005.

[13]
Anu Huttunen. Analysis and optimization of photonic crystal components for optical telecommunications. Dissertation for the degree of Doctor of Science in Technology, Helsinki University of Technology. Laboratory of Computational Science and Engineering, 2005. Published as technical report B51, ISBN 951-22-7761-1.

[14]
A. Ilin, H. Valpola, and E. Oja. Semiblind source separation of climate data detects El Niño as the component with the highest interannual variability. In Proceedings of the International Joint Conference on Neural Networks (IJCNN 2005), Montréal, Québec, Canada, pages 1722-1727, 2005.

[15]
M. Kupiainen, E. Falck, S. Ollila, P. Niemelä, A. A. Gurtovenko, M. T. Hyvonen M. Patra, M. Karttunen, and I. Vattulainen. Free volume properties of sphingomyelin, dmpc, dppc, and plpc bilayers. Journal of Computational and Theoretical Nanoscience, 2:401-413, 2005.

[16]
Jani Lahtinen. Statistical Inference and Random Network Simulation. Dissertation for the degree of Doctor of Science in Technology, Helsinki University of Technology. Laboratory of Computational Science and Engineering, 2005. Published as technical report B44, ISBN 951-22-7489-2.

[Ojanen et al., 2005]
Ville Ojanen, Johanna Pekkola, Iiro P. Jääskeläinen, Riikka Möttönen, Taina Autti, Veikko Jousmäki, and Mikko Sams. Common brain areas activated by hearing and seeing speech. Published as technical report b49, isbn 951-22-7679-8, Helsinki University of Technology. Laboratory of Computational Engineering, 2005.

[18]
Ville Ojanen. Neurocognitive mechanisms of audiovisual speech perception. Dissertation for the degree of Doctor of Science in Technology, Helsinki University of Technology. Laboratory of Computational Science and Engineering, 2005. Published as technical report B49, ISBN 951-22-7680-1.

[19]
Michael Patra and Mikko Karttunen. Stencils with isoptropic discretisation error for differential operators. accepted for publication in Numerical Methods for Partial Differential Equations, 2005.

[20]
Michael Patra, Emppu Salonen, Emma Terama, Ilpo Vattulainen, Roland Faller, Bryan W. Lee, Juha Holopainen, and Mikko Karttunen. Under the influence of alcohol: The effect of ethanol and methanol on lipid bilayers under the influence of alcohol: The effect of ethanol and methanol on lipid bilayers. accepted for publication in Biophys. J., 2005.

[21]
Tomasz Róg, Ilpo Vattulainen, and Mikko Karttunen. Modeling glycolipids: Take one. Cell. Mol. Biol. Lett., 10:625-630, 2005.

[22]
E. Salonen, E. Terama, I. Vattulainen, and M. Karttunen. Molecular dynamics modeling of polymer fragment dielectrophoresis. Biophys. J., 88:404A, 2005.

[23]
E. Salonen, E. Terama, I. Vattulainen, and Mikko Karttunen. Dielectrophoresis of nanocolloids: a molecular dynamics study. Eur. Phys. J. E, 18:133-142, 2005.

[24]
J. Särelä and H. Valpola. Denoising source separation. Journal of Machine Learning Research, 6:233-272, 2005.

[25]
J. Särelä and H. Valpola. Denoising source separation: a novel approach to ICA and feature extraction using denoising and hebbian learning. In Proceedings of the AI 2005 special session on correlation learning, pages 45-56, 2005.

[26]
Simo Särkkä, Aki Vehtari, and Jouko Lampinen. CATS benchmark time series prediction by Kalman smoother with cross-validated noise density. Neurocomputing, 2005. Accepted for publication.

[27]
Simo Särkkä, Aki Vehtari, and Jouko Lampinen. Rao-Blackwellized particle filter for multiple target tracking. Information Fusion, 2005. In press.

[28]
Lorna M. Stimson and Mark R. Wilson. Molecular dynamics simulations of side chain liquid crystal polymer molecules in isotropic and liquid-crystalline melts. J. Chem. Phys., 123:034908, 2005.

[29]
Lorna M. Stimson, Ilpo Vattulainen, Tomasz Róg, and Mikko Karttunen. Exploring the effect of xenon on biomembranes. Cell. Mol. Biol. Lett., 10:563-569, 2005.

[30]
Marko Sysi-Aho. A game perspective to complex adaptive systems. Dissertation for the degree of Doctor of Science in Technology, Helsinki University of Technology. Laboratory of Computational Science and Engineering, 2005. Published as technical report B50, ISBN 951-22-7731-X.

[31]
Peter Szelestey. Computational modelling of fracture and dislocations. Dissertation for the degree of Doctor of Science in Technology, Helsinki University of Technology. Laboratory of Computational Science and Engineering, 2005. Published as technical report B45, ISBN 951-22-7499-X.

[32]
Toni Tamminen and Jouko Lampinen. Sequential monte carlo for bayesian matching of objecs with occlusions. Published as technical report b46, isbn 951-22-7532-5, Helsinki University of Technology. Laboratory of Computational Engineering, 2005.

[33]
Toni Tamminen. Models and methods for Bayesian object matching. Dissertation for the degree of Doctor of Science in Technology, Helsinki University of Technology. Laboratory of Computational Science and Engineering, 2005. Published as technical report B52, ISBN 951-22-7906-1.

[34]
E. Terama, E. Salonen, I. Vattulainen, J. Holopainen, R. Faller, M. Patra, and M. Karttunen. Characterization of the effects of ethanol and methanol on lipid bilayers. Biophys. J., 88:414A, 2005.

[35]
Saara Vainio, Maurice Jansen, Mirkka Koivusalo, Tomasz Róg, Mikko Karttunen, Ilpo Vattulainen, and Elina Ikonen. Desmosterol cannot replace cholesterol in lipid rafts. J. Biol. Chem., in press, 2005.


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