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List of Publications 2003

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69 references, last updated 2004-11-09

[1]
D. B. Abraham, V. Mustonen, and A. J. Wood. Triangular solution for filling in a wedge. Europhysics Letters, 63:408-414, 2003. (PDF)

[2]
Markus Ahlskog, Christophe Laurent, Mark Baxendale, and Maria Huhtala. Electronic properties and applications of carbon nanotubes. Encyclopedia of Nanoscience and Nanotechnology, 2003, in print.

[3]
J. Ahveninen, I. Jääskeläinen, S. Pennanen, J. Liesivuori, R. J. Ilmoniemi, and S. Kähkönen. Auditory selective attention modulated by tryptophan depletion in humans. Neuroscience Letters, 340:181-184, 2003.

[4]
T. Andersen, K. Tiippana, and M. Sams. Modeling audiovisual integration of rapid flashes and beeps. Soc. Neurosci. Abstr., page 912.9, 2003.

[5]
B. K. Chakrabarti, D. Chowdhury, K. Kaski, and J. Kertesz. Unconventional applications of statistical physics: Physics of random networks. Econophysics and Models of Biophysics and Sociophysics, T106(91-89621-12-3), 2003.

[6]
P. Eckersley, G. F. Egan, S.-I. Amari, F. Beltrame, R. Bennett, J. G. Bjaalie, T. Dalkara, E. DeSchutter, C. Gonzalez, S. Grillner, A. Herz, K. P. Hoffmann, I. P. Jääskeläinen, S. H. Koslow, S-Y Lee, P. L. Miller, F. M. Silva, M. Novak, V. Ravindranath, R. Ritz, U. Ruotsalainen, S. Subramaniam, A. W. Toga, S. Usui, J. Pelt, P. Versuche, D. Willshaw, A. Wrobel, and T. Yiyuan. Neuroscience data and tool sharing: a legal and policy framework for neuroinformatics. Neuroinformatics, (1):149-166, 2003.

[7]
A. Fingelkurts, A. Fingelkurts, C. Krause, A. Kaplan, S. Borisov, R. Möttönen, and M. Sams. Structural (operational) synchrony of eeg alpha activity during an auditory memeory task. Neurimage, (20):529-542, 2003.

[8]
A. Fingelkurts, A. Fingelkurts, C. Krause, R. Möttönen, and M. Sams. Cortical operational synchronoy during audio-visual speech integration. Brain and Language, (85):297-312, 2003.

[9]
Michael Frydrych, Jari Kätsyri, Martin Dobsík, and Mikko Sams. Toolkit for animation of finnish talking head. In International Conference on Auditory-Visual Speech Processing AVSP'2003, pages 199-204, St. Joroiz, France, Sept. 4-7, 2003.

[10]
E. Hayes, K. Tiippana, T. Nicol, M. Sams, and N. Kraus. Integration of heard and seen speech: a factor in learning disabilities. Neuroscience Letters, (351):46-50, 2003.

[11]
J.P. Huang, Mikko Karttunen, K.W. Yu, and L. Dong. Dielectrophoresis of charged colloidal suspensions. Phys. Rev. E, 67(021403), 2003. Selected for the Virtual Journal of Biological Physics Research. (PDF)

[12]
J.P. Huang, K.W. Yu, G.Q. Gu, and Mikko Karttunen. Electrorotation in graded colloidal suspensions. Phys. Rev. E., 67(051405), 2003. Selected for the Virtual Journal of Biological Physics Research, Jun. 1, 2003. (PDF)

[13]
Maria Huhtala, Antti Kuronen, and Kimmo Kaski. Dynamical simulations of carbon nanotube bending. International Journal of Modern Physics C, 2003, accepted for publication.

[14]
Iaroslav Ispolatov and Mikko Karttunen. Collapses and explosions in self-gravitating systems. Phys. Rev. E., 68(036117), 2003. (PDF)

[15]
Virpi Junttila. FEM-Modeling of gas-structure interaction in MEMS. Dissertation for the degree of Licentiate in Technology, Helsinki University of Technology. Laboratory of Computational Engineering, 2003. Published as technical report B36, ISBN 951-22 xxx-x.

[16]
S. Kahkonen, J. Ahveninen, I. Jääskeläinen, S. Pennanen, J. Liesivuori, and V. Nikulin. Acute tryptophan depletion does not change somatosensory evoked magnetic fields. Psychopharmacology, Jyly 2003.

[17]
Ilkka Kalliomäki and Jouko Lampinen. Modeling of pose effects in oriented filter responses for head pose estimation. In J. Bigun and T. Gustavsson, editors, Proceedings of SCIA 2003, volume 2749 of Lecture Notes in Computer Science, pages 156-162. Springer, 2003.

[18]
Mikko Karttunen, Ilpo Vattulainen, and Ari Lukkarinen, editors. Novel Methods in Soft Matter Simulations. Lecture Notes in Physics. Springer Verlag, Berlin, to appear in 2004. (PDF)

[19]
Jari Kätsyri, Vasily Klucharev, Michael Frydrych, and Mikko Sams. Identification of synthetic vs. natural emotional facial expressions. In International Conference on Auditory-Visual Speech Processing AVSP'2003, pages 239-244, St. Joroiz, France, Sept. 4-7, 2003.

[20]
V. Klucharev, M. Möttönen, and M. Sams. Electrophysiological indicators of phonetic and non-phonetic multisensory interactions during audiovisual speech perception. Cognitive Brain Research, (18):65-75, 2003.

[21]
Timo Koskela, Jukka Heikkonen, and Kimmo Kaski. Web cache optimization with nonlinear model using object features. Computer Networks, 43(6):805-817, 2003.

[22]
Timo Koskela. Neural Network Methods in Analysing and Modelling Time Varying Processes. Dissertation for the degree of Doctor of Science in Technology, Helsinki University of Technology. Laboratory of Computational Engineering, 2003. Published as technical report B35, ISBN 951-22-6817-5, ISBN 951-22-6818-3. (PDF)

[23]
J. Kujala and I. P. Jääskeläinen. Mismatch negatiivisuus kliinisessä tutkimuksessa.[mismatch negativity in clinical research]. Psykologia, (4):260-268, 2003.

[24]
V. Kumar, J. Heikkonen, P. Engelhardt, and K. Kaski. Robust filtering and particle picking in micrograph images towards 3D reconstruction of purified proteins with cryo-electron microscopy. J. Structural Biology, 2003.

[25]
A. Kuronen, M. Patriarca, and K. Kaski. Dislocation nucleation from strained layer surfaces. In T. Sundius, E. Edelmann, and M. Hyvoenen-Dabek Editors, editors, Proc. of the XXXVII Annual Conference of the Finnish Physical Society, volume HU-P-265, Report Series in Physics 2003, page 22. Helsinki University, Department of Physical Sciences, 2003.

[26]
Antti Kuronen, Krister Henriksson, and Kimmo Kaski. Adatom diffusion on strained si(001)-(2x1) surface. In Morphological and Compositional Evolution of Thin Films, volume 749 of Materials Research Society Symposium Proceedings, pages W13.1-W13.6, Pittsburg, 2003. Materials Research Society.

[27]
Jani Lahtinen and Jouko Lampinen. Reversible jump MCMC for two-state multivariate poisson mixtures. Kybernetika, 99(3):307-315, 2003.

[28]
Janne Lehtonen and Mikko Sams. Ajatus ohjaa tietokonetta. Tiede, (2):46-47, 2003.

[29]
Lasse Lensu, Jussi Parkkinen, Sinikka Parkinen, Michael Frydrych, and Timo Jaaskelainen. Photoelectrical properties of protein-based optoelectronic sensor. Optical Materials, 21(4):783-788, feb 2003.

[30]
Teemu Leppänen, Mikko Karttunen, Kimmo Kaski, and Rafael A. Barrio. The dimensionality effects on turing pattern formation. Int. J. Mod. Phys. B, 17:1-13, 2003.

[31]
Teemu Leppänen, Mikko Karttunen, Kimmo Kaski, and Rafael A. Barrio. The effect of noise on turing patterns. Prog. Theor. Phys. (Suppl.), 150:367-370, 2003.

[32]
V. Mustonen and R. Rajesh. Numerical estimation of the asymptotic behaviour of solid partitions of an integer. J. Phys. A: Math. Gen., 36(24):6651-6659, 2003.

[33]
Petri Nikunen, Mikko Karttunen, and Ilpo Vattulainen. How would you integrate the equations of motion in dissipative particle dynamics simulations?. Comp. Phys. Comm., 153:407-423, 2003. (PDF)

[34]
Laura Nurminen, Francesca Tavazza, David P. Landau, Antti Kuronen, and Kimmo Kaski. Comparative study of si(001) surface structure and interatomic potentials in finite-temperature simulations. Phys. Rev. B, 67(3):035405, 2003.

[35]
Laura Nurminen, Francesca Tavazza, David P. Landau, Antti Kuronen, and Kimmo Kaski. Reconstruction and intermixing in thin ge layers on si(001). Phys. Rev. B, 68(8):085326, August 2003.

[36]
V. Ojanen, A. Revonsuo, and M. Sams. Visual awareness of low-contrast stimuli is reflected in event-related brain potentials. Psychophysiology, 40(2):192-197, March 2003.

[37]
V. Ojanen, J. Tuomainen, and M. Sams. Effect of audiovisual primes on identification of auditory target syllables. In Schwartz, Berthommier, Cathiard, and Sodoyer, editors, Proceedings of AVSP 2003, pages 71-75, St. Jorios, France, September 4-7 2003.

[38]
J. Oksanen and J. Tulkki. Linewidth enhancement factor and chirp in quantum dot lasers. J_JAP, 94(3):1983-1989, aug 2003.

[39]
J. Oksanen and J. Tulkki. On crosstalk and noise in an optical amplifier with gain clamping by vertical laser field. IEEE_J_JLT, 21(9):1914-1919, sep 2003.

[40]
Jukka-Pekka Onnela, Anirban Chakraborti, Kimmo Kaski, and Janos Kertesz. Dynamic asset trees and black monday. Physica A, (324):247-252, 2003.

[41]
Jukka-Pekka Onnela, Anirban Chakraborti, Kimmo Kaski, Janos Kertesz, and Antti Kanto. Asset trees and asset graphs in financial markets. Physica Scripta T, (106):48-54, 2003.

[42]
Jukka-Pekka Onnela, Anirban Chakraborti, Kimmo Kaski, Janos Kertesz, and Antti Kanto. Dynamics of market correlations: Taxonomy and portfolio analysis. Physical Review E, (68):056110, 2003.

[43]
Tommi Orpana and Jouko Lampinen. Building spacial models from aggregate data. Journal of Regional Science, 43(2):319-347, May 2003.

[44]
D. Osipova, J. Ahveninen, S. Kaakkola, I. Jääskeläinen, J. Huttunen, and E. Pekkonen. Effects of scopolamine on MEG spectral power and coherence in elderly subjects. Clinican Neurophysiology, (114):1902-1907, 2003.

[45]
Michael Patra and Mikko Karttunen. Systematic comparison of force fields for microscopic simulations of NaCl in aqueous solutions: Diffusion, free energy of hydration and structural properties. J. Comp. Chem., 2003. Accepted for publication. (PDF)

[46]
M. Patra, M. Patriarca, and M. Karttunen. The Thomson problem in colloid physics. In T. Sundius, E. Edelmann, and M. Hyvoenen-Dabek Editors, editors, Proc. of the XXXVII Annual Conference of the Finnish Physical Society, volume HU-P-265, Report Series in Physics 2003, page 335. Helsinki University, Department of Physical Sciences, 2003.

[47]
Michael Patra, Mikko Karttunen, Marja T. Hyvönen, Emma Falck, Peter Lindqvist, and Ilpo Vattulainen. Molecular dynamics simulations of lipid bilayers: Major artifacts due to truncating electrostatic interactions. Biophys. J., 84:3636-3645, 2003. (PDF)

[48]
Michael Patra, Mikko Karttunen, Marja T. Hyvönen, Peter Lindqvist, Emma Falck, and Ilpo Vattulainen. MD simulations of lipid bilayers: Major artifacts due to truncating electrostatic interaction. Eur. Biophys. J., 32:216, 2003.

[49]
Michael Patra, Marco Patriarca, and Mikko Karttunen. Stability of charge inversion, Thomson problem and application to electrophoresis,. Phys. Rev. E, 2003.

[50]
Michael Patra. Decay rate distributions of disordered slabs and application to random lasers. Phys. Rev. E, 67(016603), 2003. (PDF)

[51]
M. Patriarca, A. Kuronen, and K. Kaski. Visualization and tracking of crystal defects. In T. Sundius, E. Edelmann, and M. Hyvoenen-Dabek Editors, editors, Proc. of the XXXVII Annual Conference of the Finnish Physical Society, volume HU-P-265, Report Series in Physics 2003, page 10. Helsinki University, Department of Physical Sciences, 2003.

[52]
Miguel Robles, Ville Mustonen, and Kimmo Kaski. Molecular dynamic study of a single dislocation in a two-dimensional lennard&jones system. International Journal of Modern Physics C, 14(4):407-421, 2003.

[53]
M. Rodriguez and P. Törmä. Bloch oscillations on fermi gases. Phys. Rev. A, pages LANL cond-mat/0303634, 2003. submitted as rapid communication.

[54]
M. Rodriguez, P. Pedri, P. Törmä, and L. Santos. Scissors modes of two-component degenerate gases: Bose-bose and bose-fermi mixtures. Phsycial Review A, pages LANL cond-mat/ 0310498, 2003. accepted for publication.

[55]
Mirta Rodriguez. Signatures of superfluidity in atomic Fermi gases. Dissertation for the degree of Doctor of Science in Technology, Helsinki University of Technology. Laboratory of Computational Engineering, 2003. Published as technical report B34, ISBN 951-22-6799-3.

[56]
V.M.J. Säily, J-.M. Alakoskela, S.J. Ryhänen, M. Karttunen, and P.K.J. Kinnunen. Characterization of sphingosine-phosphatidylcholine monolayers: Effects of DNA. Langmuir, 19(21):8956-8963, 2003. (PDF)

[57]
Marko Sysi-Aho, Anirban Chakraborti, and Kimmo Kaski. Adaptation using hybridized genetic crossover strategies. Physica A, (322):701-709, 2003.

[58]
Marko Sysi-Aho, Anirban Chakraborti, and Kimmo Kaski. Biology helps you to win a game. In Conference Proceedings for Unconventional Applications of Statistical Physics, volume T106 of Physics Scripta T-series, pages 32-35, 2003.

[59]
Marko Sysi-Aho, Anirban Chakraborti, and Kimmo Kaski. Intelligent minority game with genetic-crossover strategies. European Physical Journal B, (34):373-377, 2003.

[60]
P. Szelestey, M. Patriarca, and K. Kaski. Computational study of core structure and peierls stress of dissociated dislocations in ni. Modelling Simul. Mater. Sci. Eng., 11:1-13, 2003.

[61]
P. Szelestey, M. Patriarca, and K. Kaski. Numerical study of dislocation properties in nickel. In T. Sundius, E. Edelmann, and M. Hyvoenen-Dabek Editors, editors, Proc. of the XXXVII Annual Conference of the Finnish Physical Society, volume HU-P-265, Report Series in Physics 2003, page 21. Helsinki University, Department of Physical Sciences, 2003.

[62]
T. Tamminen and J. Lampinen. Bayesian object matching with hierarchical priors and Markov chain Monte Carlo. In J.M. Bernardo, M.J. Bayarri, J.O. Berger, A.P. Dawid, D. Heckerman, A.F.M. Smith, and M. West, editors, Bayesian Statistics 7. Oxford University Press, 2003.

[63]
T. Tamminen and J. Lampinen. Learning an object model for feature matching in clutter. In J. Bigun and Tomas Gustavsson, editors, Proceedings of SCIA 2003, the 13th Scandinavian Conference on Image Analysis. Springer, 2003.

[64]
J. Töyli and A. Kanto. Maximum likelihoods vs. method of moment when estimating the non-integer degrees of freedom of student t-distribution. In Matti Laaksonen and Seppo Pynnönen, editors, Contributions to Management Sciens, Mathematics and Modeling. Essays in Honor of Professor Ilkka Virtanen, number 122 in Acta Wasaensia, pages 245-251. University of Vaasa, 2003.

[65]
Ilpo Vattulainen and Mikko Karttunen. Fysiikka kohtaa biologian -- biomateriaalien teoria ja mallinnus (in Finnish). Tieteessä Tapahtuu, 7, 2003. (PDF)

[66]
Aki Vehtari and Jouko Lampinen. Expected utility estimation via cross-validation. In J. M. Bernardo, M. J. Bayarri, J. O. Berger, A. P. Dawid, D. Heckerman, A. F. M. Smith, and M. West, editors, Bayesian Statistics 7, pages 701-710. Oxford University Press, 2003.

[67]
Aki Vehtari. Discussion to `Bayesian treed generalized linear models' by Chipman, H. A., George, E. I., and McCulloch R. E. In J. M. Bernardo, M. J. Bayarri, J. O. Berger, A. P. Dawid, D. Heckerman, A. F. M. Smith, and M. West, editors, Bayesian Statistics 7, page 101. Oxford University Press, 2003.

[68]
Aki Vehtari. Discussion to `Hierarchical multivariate car models for spatio-temporally correlated survival data' by Carlin B. P., and Banerjee. In J. M. Bernardo, M. J. Bayarri, J. O. Berger, A. P. Dawid, D. Heckerman, A. F. M. Smith, and M. West, editors, Bayesian Statistics 7, page 61. Oxford University Press, 2003.

[69]
Sebastian von Alfthan, Antti Kuronen, and Kimmo Kaski. Realistic models of amorphous silica: A comparative study of different potentials. Phys. Rev. B, 68(7):073203, August 2003.


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